Transcript: LINC02188:11

Basic information

LNCipedia transcript ID: LINC02188:11 
LNCipedia gene ID: LINC02188
RefSeq ID: NR_135183
Location (hg38): chr16:86722091-86737826
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 542 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000569740.1; CTD-2015G9.2-002; OTTHUMT00000432204.1; NONHSAT144242; NR_135183.1
Alternative gene names: ENSG00000261175.1; CTD-2015G9.2; OTTHUMG00000176484.1; LOC102724344


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -135.4448 non-coding 
CPAT coding probability 9.34% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02188:11 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FOXL1-3:2
4.0 lnc-FOXL1-3:2
4.1 lnc-FOXL1-3:2
5.0 lnc-FOXL1-3:2
5.1 LINC02188:3
5.2 LINC02188:11