Transcript: LINC02156:9

Basic information

LNCipedia transcript ID: LINC02156:9 
HGNC Gene Symbol: LINC02156    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2156
Ensembl Gene ID: ENSG00000257906
Ensembl Transcript ID: ENST00000552320
Location (hg38): chr12:47415008-47420179
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 483 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000552320; ENST00000552320.1; RP1-90J4.1-001; OTTHUMT00000405336.1
Alternative gene names: ENSG00000257906; RP1-90J4.1; ENSG00000257906.1; OTTHUMG00000169664.1; LINC02156


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -39.7273 non-coding 
CPAT coding probability 3.74% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02156:9 no no no no

Available literature

  1. Fan (2016), Identification of a RNA-Seq Based 8-Long Non-Coding RNA Signature Predicting Survival in Esophageal Cancer., Med. Sci. Monit.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FAM113B-4:3
3.1 lnc-FAM113B-4:3
4.0 lnc-FAM113B-4:3
4.1 lnc-FAM113B-4:3
5.0 lnc-FAM113B-4:3
5.1 LINC02156:4
5.2 LINC02156:9