Transcript: LINC02151:3

Basic information

LNCipedia transcript ID: LINC02151:3 
HGNC Gene Symbol: LINC02151    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2151
Ensembl Gene ID: ENSG00000236437
Ensembl Transcript ID: ENST00000452629
Location (hg38): chr11:116496899-116500630
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 921 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00019174; ENST00000452629; ENST00000452629.1; AP001891.1-001; OTTHUMT00000104866.1; NONHSAT024348
Alternative gene names: XLOC_009565; linc-CADM1-2; ENSG00000236437; AP001891.1; ENSG00000236437.1; OTTHUMG00000045137.1; LINC02151


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -116.3097 non-coding 
CPAT coding probability 1.46% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02151:3 no no no no

Available literature

  1. Cui (2016), Long Non-Coding RNA: Potential Diagnostic and Therapeutic Biomarker for Major Depressive Disorder., Med. Sci. Monit.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-BUD13-1:1
3.1 lnc-BUD13-1:1
4.0 lnc-BUD13-4:1
4.1 lnc-BUD13-4:1
5.0 lnc-BUD13-4:1
5.1 LINC02151:2
5.2 LINC02151:3