Transcript: LINC02149:5

Basic information

LNCipedia transcript ID: LINC02149:5 
HGNC Gene Symbol: LINC02149    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2149
Ensembl Gene ID: ENSG00000248486
Ensembl Transcript ID: ENST00000511443
Location (hg38): chr5:15192139-15266541
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 558 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00009609; ENST00000511443; ENST00000511443.1; RP1-137K24.1-001; OTTHUMT00000366111.1; NONHSAT100578
Alternative gene names: XLOC_004740; linc-ANKH-1; ENSG00000248486; RP1-137K24.1; ENSG00000248486.1; OTTHUMG00000161793.1; LINC02149


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -112.3342 non-coding 
CPAT coding probability 33.29% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02149:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ANKH-2:1
3.1 lnc-ANKH-3:1
4.0 lnc-ANKH-3:1
4.1 lnc-ANKH-3:1
5.0 lnc-ANKH-3:1
5.1 LINC02149:3
5.2 LINC02149:5