Transcript: LINC02102:16

Basic information

LNCipedia transcript ID: LINC02102:16 
HGNC Gene Symbol: LINC02102    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2102
Ensembl Gene ID: ENSG00000248677
Ensembl Transcript ID: ENST00000514788
Location (hg38): chr5:6705150-6706272
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 381 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00009597; ENST00000514788; ENST00000514788.1; CTD-2044J15.1-002; OTTHUMT00000365838.1; NONHSAT100213
Alternative gene names: XLOC_004725; linc-NSUN2-3; ENSG00000248677; CTD-2044J15.1; ENSG00000248677.1; OTTHUMG00000161705.1; LINC02102


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -122.9655 non-coding 
CPAT coding probability 0.13% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02102:16 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NSUN2-1:3
3.1 lnc-NSUN2-1:3
4.0 lnc-NSUN2-1:3
4.1 lnc-NSUN2-1:3
5.0 lnc-NSUN2-1:3
5.1 LINC02102:8
5.2 LINC02102:16