Transcript: LINC02082:5

Basic information

LNCipedia transcript ID: LINC02082:5 
LNCipedia gene ID: LINC02082
RefSeq ID: NR_109989
Location (hg38): chr3:168901945-168921996
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 745 bp
Exons: 5
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00005654; ENST00000484765; ENST00000484765.1; RP11-368I23.2-001; OTTHUMT00000351398.1; NONHSAT093141; NR_109989.1
Alternative gene names: XLOC_002912; linc-MYNN-2; ENSG00000242268; RP11-368I23.2; ENSG00000242268.1; OTTHUMG00000158577.1; LOC100507661


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -25.4813 non-coding 
CPAT coding probability 38.89% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC02082:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MYNN-2:1
3.1 lnc-MYNN-3:1
4.0 lnc-MYNN-3:1
4.1 lnc-MYNN-3:1
5.0 lnc-MYNN-3:1
5.1 LINC02082:2
5.2 LINC02082:5