Transcript: LINC02056:46

Basic information

LNCipedia transcript ID: LINC02056:46 
HGNC Gene Symbol: LINC02056    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2056
Ensembl Gene ID: ENSG00000248371
Ensembl Transcript ID: ENST00000506250
Location (hg38): chr5:72574186-72580977
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 591 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00009695; ENST00000506250; ENST00000506250.1; CTC-347C20.2-002; OTTHUMT00000372651.1; NONHSAT102067
Alternative gene names: XLOC_004874; linc-ZNF366-5; ENSG00000248371; CTC-347C20.2; ENSG00000248371.1; OTTHUMG00000163319.1; ENSG00000248371.5; LINC02056


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -13.8901 non-coding 
CPAT coding probability 22.19% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02056:46 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ZNF366-1:5
3.1 lnc-ZNF366-2:5
4.0 lnc-ZNF366-3:14
4.1 lnc-ZNF366-3:14
5.0 lnc-ZNF366-3:14
5.1 LINC02056:23
5.2 LINC02056:46