Transcript: LINC02055:24

Basic information

LNCipedia transcript ID: LINC02055:24 
HGNC Gene Symbol: LINC02055    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2055
Ensembl Gene ID: ENSG00000254101
Ensembl Transcript ID: ENST00000517345
Location (hg38): chr8:136536976-136798234
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 439 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000517345; ENST00000517345.1; RP11-30J20.1-003; OTTHUMT00000377405.1; NONHSAT129312; ENST00000517345.5
Alternative gene names: ENSG00000254101; RP11-30J20.1; ENSG00000254101.1; OTTHUMG00000164139.2; ENSG00000254101.5; LINC02055


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 3.5635 non-coding 
CPAT coding probability 1.01% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02055:24 no no no no

Available literature

  1. Xiao (2016), The significance of low levels of LINC RP1130-1 expression in human hepatocellular carcinoma., Biosci Trends


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-KHDRBS3-8:5
3.1 lnc-KHDRBS3-9:5
4.0 lnc-KHDRBS3-9:5
4.1 lnc-KHDRBS3-9:5
5.0 lnc-KHDRBS3-9:5
5.1 LINC02055:10
5.2 LINC02055:24