Transcript: LINC02004:9

Basic information

LNCipedia transcript ID: LINC02004:9 
HGNC Gene Symbol: LINC02004    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2004
Ensembl Gene ID: ENSG00000240006
Ensembl Transcript ID: ENST00000482019
Location (hg38): chr3:134313576-134321171
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 294 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00005590; ENST00000482019; ENST00000482019.1; RP11-200A1.1-001; OTTHUMT00000357196.1; NONHSAT092231
Alternative gene names: XLOC_002830; linc-CEP63-2; ENSG00000240006; RP11-200A1.1; ENSG00000240006.1; OTTHUMG00000159760.1; LINC02004


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -533.8192 non-coding 
CPAT coding probability 3.88% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02004:9 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CEP63-1:1
3.1 lnc-CEP63-1:1
4.0 lnc-CEP63-1:1
4.1 lnc-CEP63-1:1
5.0 lnc-CEP63-1:1
5.1 LINC02004:5
5.2 LINC02004:9