Transcript: LINC02001:7

Basic information

LNCipedia transcript ID: LINC02001:7 
LNCipedia gene ID: LINC02001
RefSeq ID: NR_135479
Location (hg38): chr17:35568114-35574313
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 825 bp
Exons: 2
Sources: Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_135479.1
Alternative gene names: LOC105371743


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -134.297 non-coding 
CPAT coding probability 0.30% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02001:7 no no no no

Available literature

  1. Liu (2017), CRISPRi-based genome-scale identification of functional long noncoding RNA loci in human cells., Science


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 LINC02001:7
5.1 LINC02001:7
5.2 LINC02001:7