Transcript: LINC02001:14

Basic information

LNCipedia transcript ID: LINC02001:14 
HGNC Gene Symbol: LINC02001    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2001
Ensembl Gene ID: ENSG00000267321
Ensembl Transcript ID: ENST00000592381
Location (hg38): chr17:35568120-35574792
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1298 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT053108; ENST00000592381.1
Alternative gene names: ENSG00000267321.1; RP11-1094M14.11; ENSG00000267321.2; LINC02001


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 1 non-coding 
PhyloCSF score -102.0661 non-coding 
CPAT coding probability 0.52% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC02001:14 no no no no

Available literature

  1. Liu (2017), CRISPRi-based genome-scale identification of functional long noncoding RNA loci in human cells., Science


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AP2B1-2:1
4.0 lnc-AP2B1-2:1
4.1 lnc-AP2B1-2:1
5.0 lnc-AP2B1-2:1
5.1 LINC02001:8
5.2 LINC02001:14