Transcript: LINC01972:4

Basic information

LNCipedia transcript ID: LINC01972:4 
HGNC Gene Symbol: LINC01972    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1972
Ensembl Gene ID: ENSG00000230401
Ensembl Transcript ID: ENST00000422271
Location (hg38): chr3:194765238-194768712
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 553 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00005926; ENST00000422271; ENST00000422271.1; AC090505.4-001; OTTHUMT00000342748.1
Alternative gene names: XLOC_003386; linc-LSG1-1; ENSG00000230401; AC090505.4; ENSG00000230401.1; OTTHUMG00000156022.1; LINC01972


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -534.3492 non-coding 
CPAT coding probability 0.13% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01972:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-LSG1-1:1
3.1 lnc-LSG1-1:1
4.0 lnc-LSG1-1:1
4.1 lnc-LSG1-1:1
5.0 lnc-LSG1-1:1
5.1 LINC01972:2
5.2 LINC01972:4