Transcript: LINC01954:16

Basic information

LNCipedia transcript ID: LINC01954:16 
HGNC Gene Symbol: LINC01954    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1954
Ensembl Gene ID: ENSG00000271952
Ensembl Transcript ID: ENST00000607419
Location (hg38): chr2:10878269-10885118
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 461 bp
Exons: 2
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000607419.1
Alternative gene names: ENSG00000271952.1; RP11-245G13.2; LINC01954


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -186.1978 non-coding 
CPAT coding probability 0.86% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01954:16 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC092687.4.1-1:2
4.0 lnc-AC092687.4.1-1:2
4.1 lnc-AC092687.4.1-1:2
5.0 lnc-AC092687.4.1-1:2
5.1 LINC01954:7
5.2 LINC01954:16