Transcript: LINC01952:16

Basic information

LNCipedia transcript ID: LINC01952:16 
HGNC Gene Symbol: LINC01952    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1952
Ensembl Gene ID: ENSG00000234183
Ensembl Transcript ID: ENST00000450016
Location (hg38): chr7:44849059-44849565
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 281 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00013001; ENST00000450016.1; AC004854.4-001; OTTHUMT00000341812.1; NONHSAT120404
Alternative gene names: XLOC_006069; linc-CCM2-2; ENSG00000234183.1; AC004854.4; OTTHUMG00000155819.1; LINC01952


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 8.1053 non-coding 
CPAT coding probability 0.54% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01952:16 no no no no

Available literature

  1. Wang (2017), Differential expression profile of long noncoding RNAs in human chorionic villi of early recurrent miscarriage., Clin. Chim. Acta


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PPIA-1:3
3.1 lnc-PPIA-1:4
4.0 lnc-PPIA-1:4
4.1 lnc-PPIA-1:4
5.0 lnc-PPIA-1:4
5.1 LINC01952:9
5.2 LINC01952:16