Transcript: LINC01950:7

Basic information

LNCipedia transcript ID: LINC01950:7 
HGNC Gene Symbol: LINC01950    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1950
Ensembl Gene ID: ENSG00000251027
Ensembl Transcript ID: ENST00000513273
RefSeq ID: NR_104671
Location (hg38): chr5:106815197-107011014
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 572 bp
Exons: 4
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00009748; ENST00000513273; ENST00000513273.1; CTC-254B4.1-001; OTTHUMT00000370431.1; NONHSAT103104; NR_104671; NR_104671.1
Alternative gene names: XLOC_004951; linc-NUDT12-2; ENSG00000251027; CTC-254B4.1; ENSG00000251027.1; OTTHUMG00000162799.1; LINC01950; LOC102467213


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -109.9527 non-coding 
CPAT coding probability 0.15% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01950:7 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-EFNA5-2:2
3.1 lnc-EFNA5-2:2
4.0 lnc-EFNA5-2:2
4.1 lnc-EFNA5-2:2
5.0 lnc-EFNA5-2:2
5.1 LINC01950:3
5.2 LINC01950:7