Transcript: LINC01948:9

Basic information

LNCipedia transcript ID: LINC01948:9 
HGNC Gene Symbol: LINC01948    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1948
Ensembl Gene ID: ENSG00000248727
Ensembl Transcript ID: ENST00000511661
Location (hg38): chr5:56465010-56481946
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 578 bp
Exons: 3
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000511661.2
Alternative gene names: ENSG00000248727.5; CTC-236F12.4; LINC01948


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -858.8822 non-coding 
CPAT coding probability 3.73% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01948:9 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-CTC-236F12.4.1-1:6
4.1 lnc-CTC-236F12.4.1-1:6
5.0 lnc-CTC-236F12.4.1-1:6
5.1 LINC01948:3
5.2 LINC01948:9