Transcript: LINC01948:13

Basic information

LNCipedia transcript ID: LINC01948:13 
LNCipedia gene ID: LINC01948
Location (hg38): chr5:56449794-56453450
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1165 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00010340; NONHSAT101538
Alternative gene names: XLOC_004829; linc-ANKRD55-6


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -121.1591 non-coding 
CPAT coding probability 0.76% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01948:13 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CTC-236F12.4.1-1:5
3.1 lnc-CTC-236F12.4.1-1:5
4.0 lnc-CTC-236F12.4.1-1:5
4.1 lnc-CTC-236F12.4.1-1:5
5.0 lnc-CTC-236F12.4.1-1:5
5.1 LINC01948:7
5.2 LINC01948:13