Transcript: LINC01934:18

Basic information

LNCipedia transcript ID: LINC01934:18 
LNCipedia gene ID: LINC01934
Location (hg38): chr2:181123837-181399559
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1771 bp
Exons: 5
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017
Alternative transcript names: ENST00000435411; ENST00000435411.1; AC104820.2-001; OTTHUMT00000334384.2; NONHSAT075864; ENST00000435411.5
Alternative gene names: ENSG00000234663; AC104820.2; ENSG00000234663.1; OTTHUMG00000154205.2; ENSG00000234663.5; LINC01934


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -31.5833 non-coding 
CPAT coding probability 0.08% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01934:18 no no no no

Available literature

  1. Plaza-Izurieta (2015), Expression analysis in intestinal mucosa reveals complex relations among genes under the association peaks in celiac disease., Eur. J. Hum. Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-UBE2E3-1:4
3.1 lnc-UBE2E3-1:4
4.0 lnc-UBE2E3-1:4
4.1 lnc-UBE2E3-1:4
5.0 lnc-UBE2E3-1:4
5.1 LINC01934:7
5.2 LINC01934:18