Transcript: LINC01934:17

Basic information

LNCipedia transcript ID: LINC01934:17 
LNCipedia gene ID: LINC01934
RefSeq ID: NR_130784
Location (hg38): chr2:181123837-181399553
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1765 bp
Exons: 5
Sources: Broad Institute; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00002726; NR_130784.1
Alternative gene names: XLOC_001776; linc-ITGA4-1; LOC101927156


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -31.5833 non-coding 
CPAT coding probability 0.08% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01934:17 no no no no

Available literature

  1. Plaza-Izurieta (2015), Expression analysis in intestinal mucosa reveals complex relations among genes under the association peaks in celiac disease., Eur. J. Hum. Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-UBE2E3-1:3
3.1 lnc-UBE2E3-1:3
4.0 lnc-UBE2E3-1:3
4.1 lnc-UBE2E3-1:3
5.0 lnc-UBE2E3-1:3
5.1 LINC01934:6
5.2 LINC01934:17