Transcript: LINC01891:5

Basic information

LNCipedia transcript ID: LINC01891:5 
HGNC Gene Symbol: LINC01891    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1891
Ensembl Gene ID: ENSG00000231682
Ensembl Transcript ID: ENST00000439798
Location (hg38): chr2:234444590-234454595
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 538 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000439798; ENST00000439798.1; AC097713.4-001; OTTHUMT00000329803.1; NONHSAT077533
Alternative gene names: ENSG00000231682; AC097713.4; ENSG00000231682.1; OTTHUMG00000153157.1; LINC01891


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -70.5788 non-coding 
CPAT coding probability 0.33% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01891:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ARL4C-1:1
3.1 lnc-ARL4C-1:1
4.0 lnc-ARL4C-1:1
4.1 lnc-ARL4C-1:1
5.0 lnc-ARL4C-1:1
5.1 LINC01891:3
5.2 LINC01891:5