Transcript: LINC01886:8

Basic information

LNCipedia transcript ID: LINC01886:8 
HGNC Gene Symbol: LINC01886    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1886
Ensembl Gene ID: ENSG00000224568
Ensembl Transcript ID: ENST00000439893
Location (hg38): chr2:107542749-107555639
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 580 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00002973; ENST00000439893; ENST00000439893.1; AC096669.3-002; OTTHUMT00000330347.1; NONHSAT073068
Alternative gene names: XLOC_001619; linc-RGPD4-2; ENSG00000224568; AC096669.3; ENSG00000224568.1; OTTHUMG00000153209.2; LINC01886


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -37.8197 non-coding 
CPAT coding probability 1.76% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01886:8 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RGPD4-2:3
3.1 lnc-RGPD4-2:3
4.0 lnc-RGPD4-2:3
4.1 lnc-RGPD4-2:3
5.0 lnc-RGPD4-2:3
5.1 LINC01886:4
5.2 LINC01886:8