Transcript: LINC01878:14

Basic information

LNCipedia transcript ID: LINC01878:14 
HGNC Gene Symbol: LINC01878    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1878
Ensembl Gene ID: ENSG00000234308
Ensembl Transcript ID: ENST00000434559
RefSeq ID: NR_131942
Location (hg38): chr2:212795331-212796720
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 769 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00003093; ENST00000434559; ENST00000434559.1; AC093381.2-002; OTTHUMT00000336997.1; NONHSAT076696; NR_131942.1
Alternative gene names: XLOC_001833; linc-SPAG16-3; ENSG00000234308; AC093381.2; ENSG00000234308.1; OTTHUMG00000154769.1; ENSG00000234308.2; LINC01878; LOC102725079


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -141.2551 non-coding 
CPAT coding probability 0.17% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01878:14 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SPAG16-3:5
3.1 lnc-SPAG16-4:5
4.0 lnc-SPAG16-4:5
4.1 lnc-SPAG16-4:5
5.0 lnc-SPAG16-4:5
5.1 LINC01878:6
5.2 LINC01878:14