Transcript: LINC01878:13

Basic information

LNCipedia transcript ID: LINC01878:13 
LNCipedia gene ID: LINC01878
Location (hg38): chr2:212795328-212819264
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 319 bp
Exons: 4
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00004008; NONHSAT076695
Alternative gene names: XLOC_001833; linc-SPAG16-3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -274.295 non-coding 
CPAT coding probability 2.62% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01878:13 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SPAG16-3:4
3.1 lnc-SPAG16-4:4
4.0 lnc-SPAG16-4:4
4.1 lnc-SPAG16-4:4
5.0 lnc-SPAG16-4:4
5.1 LINC01878:5
5.2 LINC01878:13