Transcript: LINC01852:20

Basic information

LNCipedia transcript ID: LINC01852:20 
LNCipedia gene ID: LINC01852
Location (hg38): chr15:38071628-38072683
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 966 bp
Exons: 2
Sources: Broad Institute
Alternative transcript names: TCONS_00023245
Alternative gene names: XLOC_011430; linc-MEIS2-4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -112.138 non-coding 
CPAT coding probability 4.14% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01852:20 no no no no

Available literature

  1. Chai (2016), Long noncoding RNA ENST00000434223 suppressed tumor progression in non-small cell lung cancer., Tumour Biol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RASGRP1-3:4
3.1 lnc-RASGRP1-4:5
4.0 lnc-RASGRP1-4:5
4.1 lnc-RASGRP1-4:5
5.0 lnc-RASGRP1-4:5
5.1 LINC01852:9
5.2 LINC01852:20