Transcript: LINC01850:5

Basic information

LNCipedia transcript ID: LINC01850:5 
HGNC Gene Symbol: LINC01850    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1850
Ensembl Gene ID: ENSG00000227708
Ensembl Transcript ID: ENST00000429916
Location (hg38): chr2:153337705-153357422
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 357 bp
Exons: 4
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00003037; ENST00000429916; ENST00000429916.1; AC079150.3-001; OTTHUMT00000332578.1; NONHSAT075001
Alternative gene names: XLOC_001713; linc-GALNT13-1; ENSG00000227708; AC079150.3; ENSG00000227708.1; OTTHUMG00000153820.1; LINC01850


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -16.1257 non-coding 
CPAT coding probability 0.24% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01850:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-GALNT13-2:1
3.1 lnc-GALNT13-2:1
4.0 lnc-GALNT13-2:1
4.1 lnc-GALNT13-2:1
5.0 lnc-GALNT13-2:1
5.1 LINC01850:3
5.2 LINC01850:5