Transcript: LINC01841:5

Basic information

LNCipedia transcript ID: LINC01841:5 
HGNC Gene Symbol: LINC01841    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1841
Ensembl Gene ID: ENSG00000266913
Ensembl Transcript ID: ENST00000588438
Location (hg38): chr19:14325352-14370196
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 523 bp
Exons: 4
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT061405; ENST00000588438.1
Alternative gene names: ENSG00000266913.1; CTC-548K16.2; LINC01841


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -36.564 non-coding 
CPAT coding probability 7.56% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01841:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-DDX39A-2:2
4.0 lnc-DDX39A-2:2
4.1 lnc-DDX39A-2:2
5.0 lnc-DDX39A-2:2
5.1 LINC01841:2
5.2 LINC01841:5