Transcript: LINC01832:3

Basic information

LNCipedia transcript ID: LINC01832:3 
HGNC Gene Symbol: LINC01832    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1832
Ensembl Gene ID: ENSG00000224231
Ensembl Transcript ID: ENST00000446520
RefSeq ID: NR_135526
Location (hg38): chr2:138101884-138105905
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 553 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00003009; ENST00000446520; ENST00000446520.1; AC069394.1-001; OTTHUMT00000331839.1; NONHSAT074656; NR_135526.1
Alternative gene names: XLOC_001686; linc-SPOPL-2; ENSG00000224231; AC069394.1; ENSG00000224231.1; OTTHUMG00000153616.1; LINC01832; LOC105373635


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -239.1523 non-coding 
CPAT coding probability 1.98% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01832:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-HNMT-1:1
3.1 lnc-HNMT-1:1
4.0 lnc-HNMT-1:1
4.1 lnc-HNMT-1:1
5.0 lnc-HNMT-1:1
5.1 LINC01832:2
5.2 LINC01832:3