Transcript: LINC01821:9

Basic information

LNCipedia transcript ID: LINC01821:9 
HGNC Gene Symbol: LINC01821    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1821
Ensembl Gene ID: ENSG00000225539
Ensembl Transcript ID: ENST00000419786
Location (hg38): chr2:194344282-194419645
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1084 bp
Exons: 6
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000419786; ENST00000419786.1; AC018799.1-001; OTTHUMT00000334918.1; NONHSAT076164
Alternative gene names: ENSG00000225539; AC018799.1; ENSG00000225539.1; OTTHUMG00000154350.2; ENSG00000225539.5; LINC01821


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -35.8617 non-coding 
CPAT coding probability 0.28% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01821:9 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SLC39A10-5:3
3.1 lnc-SLC39A10-5:3
4.0 lnc-SLC39A10-5:3
4.1 lnc-SLC39A10-5:3
5.0 lnc-SLC39A10-5:3
5.1 LINC01821:5
5.2 LINC01821:9