Transcript: LINC01818:7

Basic information

LNCipedia transcript ID: LINC01818:7 
HGNC Gene Symbol: LINC01818    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1818
Ensembl Gene ID: ENSG00000230645
Ensembl Transcript ID: ENST00000437118
Location (hg38): chr2:150171423-150301080
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 368 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00003029; ENST00000437118; ENST00000437118.1; AC016682.1-001; OTTHUMT00000332335.1; NONHSAT074920
Alternative gene names: XLOC_001704; linc-TNFAIP6-5; ENSG00000230645; AC016682.1; ENSG00000230645.1; OTTHUMG00000153755.1; LINC01818


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -95.9843 non-coding 
CPAT coding probability 3.35% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01818:7 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-LYPD6-3:2
3.1 lnc-LYPD6-3:2
4.0 lnc-LYPD6-3:2
4.1 lnc-LYPD6-3:2
5.0 lnc-LYPD6-3:2
5.1 LINC01818:4
5.2 LINC01818:7