Transcript: LINC01816:18

Basic information

LNCipedia transcript ID: LINC01816:18 
HGNC Gene Symbol: LINC01816    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1816
Ensembl Gene ID: ENSG00000231327
Ensembl Transcript ID: ENST00000414141
Location (hg38): chr2:70124036-70125317
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 662 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000414141; ENST00000414141.1; AC016700.5-001; OTTHUMT00000329697.1; NONHSAT071469
Alternative gene names: ENSG00000231327; AC016700.5; ENSG00000231327.1; OTTHUMG00000153133.1; LINC01816


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -12.6269 non-coding 
CPAT coding probability 31.22% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01816:18 no no no no

Available literature

  1. Tian (2017), Differentially Expressed lncRNAs in Gastric Cancer Patients: A Potential Biomarker for Gastric Cancer Prognosis., J Cancer


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C2orf42-1:2
3.1 lnc-C2orf42-1:2
4.0 lnc-C2orf42-1:2
4.1 lnc-C2orf42-1:2
5.0 lnc-C2orf42-1:2
5.1 LINC01816:7
5.2 LINC01816:18