Transcript: LINC01815:10

Basic information

LNCipedia transcript ID: LINC01815:10 
LNCipedia gene ID: LINC01815
Location (hg38): chr2:81462695-81466946
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 520 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016
Alternative transcript names: TCONS_00003328; ENST00000446580; ENST00000446580.1; AC012075.2-001; OTTHUMT00000328738.1; NONHSAT071905
Alternative gene names: XLOC_002182; linc-LRRTM1-5; ENSG00000235519; AC012075.2; ENSG00000235519.1; OTTHUMG00000152947.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -55.1407 non-coding 
CPAT coding probability 0.25% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01815:10 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-LRRTM1-3:1
3.1 lnc-LRRTM1-5:1
4.0 lnc-LRRTM1-5:1
4.1 lnc-LRRTM1-5:1
5.0 lnc-LRRTM1-5:1
5.1 LINC01815:5
5.2 LINC01815:10