Transcript: LINC01798:24

Basic information

LNCipedia transcript ID: LINC01798:24 
LNCipedia gene ID: LINC01798
Location (hg38): chr2:66691435-66695465
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 552 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000443420; ENST00000443420.1; AC007392.3-004; OTTHUMT00000328218.1; NONHSAT071237
Alternative gene names: ENSG00000232046; AC007392.3; ENSG00000232046.1; OTTHUMG00000152838.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -104.4308 non-coding 
CPAT coding probability 0.33% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01798:24 no no no no

Available literature

  1. Tørring (2014), Long non-coding RNA expression profiles in hereditary haemorrhagic telangiectasia., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MEIS1-3:5
3.1 lnc-MEIS1-3:4
4.0 lnc-MEIS1-3:4
4.1 lnc-MEIS1-3:4
5.0 lnc-MEIS1-3:4
5.1 LINC01798:10
5.2 LINC01798:24