Transcript: LINC01797:10

Basic information

LNCipedia transcript ID: LINC01797:10 
HGNC Gene Symbol: LINC01797    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1797
Ensembl Gene ID: ENSG00000237179
Ensembl Transcript ID: ENST00000451698
Location (hg38): chr2:66697162-66703197
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 412 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00003313; ENST00000451698; ENST00000451698.1; AC007392.4-001; OTTHUMT00000328220.1; NONHSAT071243
Alternative gene names: XLOC_002140; linc-SPRED2-9; ENSG00000237179; AC007392.4; ENSG00000237179.1; OTTHUMG00000152839.1; ENSG00000237179.5; LINC01797


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -19.8638 non-coding 
CPAT coding probability 2.00% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01797:10 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SPRED2-6:2
3.1 lnc-SPRED2-7:2
4.0 lnc-SPRED2-7:2
4.1 lnc-SPRED2-7:2
5.0 lnc-SPRED2-7:2
5.1 LINC01797:5
5.2 LINC01797:10