Transcript: LINC01780:18

Basic information

LNCipedia transcript ID: LINC01780:18 
HGNC Gene Symbol: LINC01780    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1780
Ensembl Gene ID: ENSG00000232650
Ensembl Transcript ID: ENST00000457683
Location (hg38): chr1:119328252-119356182
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 391 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000457683; ENST00000457683.1; RP5-834N19.1-001; OTTHUMT00000034530.1; NONHSAT005555
Alternative gene names: ENSG00000232650; RP5-834N19.1; ENSG00000232650.1; OTTHUMG00000012409.1; ENSG00000232650.5; LINC01780


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -143.2485 non-coding 
CPAT coding probability 2.15% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01780:18 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-HAO2-1:2
3.1 lnc-HAO2-1:2
4.0 lnc-HAO2-1:2
4.1 lnc-HAO2-1:2
5.0 lnc-HAO2-1:2
5.1 LINC01780:9
5.2 LINC01780:18