Transcript: LINC01771:17

Basic information

LNCipedia transcript ID: LINC01771:17 
LNCipedia gene ID: LINC01771
Location (hg38): chr1:53328249-53337218
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 326 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00000199; ENST00000445039; ENST00000445039.1; RP4-784A16.5-001; OTTHUMT00000024802.1; NONHSAT003313
Alternative gene names: XLOC_000197; linc-DMRTB1-2; ENSG00000225675; RP4-784A16.5; ENSG00000225675.1; OTTHUMG00000008948.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 5.6825 non-coding 
CPAT coding probability 1.39% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01771:17 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CPT2-3:2
3.1 lnc-CPT2-7:2
4.0 lnc-CPT2-7:2
4.1 lnc-CPT2-7:2
5.0 lnc-CPT2-7:2
5.1 LINC01771:9
5.2 LINC01771:17