Transcript: LINC01762:46

Basic information

LNCipedia transcript ID: LINC01762:46 
HGNC Gene Symbol: LINC01762    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1762
Ensembl Gene ID: ENSG00000233154
Ensembl Transcript ID: ENST00000430107
Location (hg38): chr1:116463721-116466452
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 480 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000430107; ENST00000430107.1; RP4-655J12.4-006; OTTHUMT00000097635.1; NONHSAT005446
Alternative gene names: ENSG00000233154; RP4-655J12.4; ENSG00000233154.1; OTTHUMG00000014035.5; ENSG00000233154.5; LINC01762


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -762.8764 non-coding 
CPAT coding probability 5.13% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01762:46 no no no no

Available literature

  1. Tørring (2014), Long non-coding RNA expression profiles in hereditary haemorrhagic telangiectasia., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ATP1A1OS-2:5
3.1 lnc-ATP1A1OS-2:5
4.0 lnc-ATP1A1OS-2:5
4.1 lnc-ATP1A1OS-2:5
5.0 lnc-ATP1A1OS-2:5
5.1 LINC01762:22
5.2 LINC01762:46