Transcript: LINC01756:4

Basic information

LNCipedia transcript ID: LINC01756:4 
HGNC Gene Symbol: LINC01756    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1756
Ensembl Gene ID: ENSG00000230523
Ensembl Transcript ID: ENST00000417651
RefSeq ID: NR_110758
Location (hg38): chr1:29329620-29350114
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2148 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00000494; ENST00000417651; ENST00000417651.1; RP3-437I16.1-001; OTTHUMT00000011215.1; NONHSAT002025; NR_110758; NR_110758.1
Alternative gene names: XLOC_000764; linc-MECR-4; ENSG00000230523; RP3-437I16.1; ENSG00000230523.1; OTTHUMG00000003931.1; LINC01756; LOC101928460


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -11.0355 non-coding 
CPAT coding probability 4.63% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01756:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MECR-1:1
3.1 lnc-MECR-1:1
4.0 lnc-MECR-5:1
4.1 lnc-MECR-5:1
5.0 lnc-MECR-5:1
5.1 LINC01756:2
5.2 LINC01756:4