Transcript: LINC01747:8

Basic information

LNCipedia transcript ID: LINC01747:8 
LNCipedia gene ID: LINC01747
Location (hg38): chr20:22683662-22685344
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 565 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: TCONS_00028020; ENST00000437696; ENST00000437696.1; RP11-359G22.2-002; OTTHUMT00000078300.1; NONHSAT079005
Alternative gene names: XLOC_013686; linc-FOXA2-3; ENSG00000230400; RP11-359G22.2; ENSG00000230400.1; OTTHUMG00000032047.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -144.2939 non-coding 
CPAT coding probability 4.86% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01747:8 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FOXA2-4:1
3.1 lnc-FOXA2-4:1
4.0 lnc-FOXA2-4:1
4.1 lnc-FOXA2-4:1
5.0 lnc-FOXA2-4:1
5.1 LINC01747:2
5.2 LINC01747:8