Transcript: LINC01742:6

Basic information

LNCipedia transcript ID: LINC01742:6 
LNCipedia gene ID: LINC01742
Location (hg38): chr20:58003855-58004564
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 593 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00028235; NONHSAT080530
Alternative gene names: XLOC_013584; linc-C20orf85


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -69.247 non-coding 
CPAT coding probability 2.21% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01742:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C20orf85-1:1
3.1 lnc-C20orf85-1:1
4.0 lnc-C20orf85-1:1
4.1 lnc-C20orf85-1:1
5.0 lnc-C20orf85-1:1
5.1 LINC01742:3
5.2 LINC01742:6