Transcript: LINC01728:9

Basic information

LNCipedia transcript ID: LINC01728:9 
LNCipedia gene ID: LINC01728
Location (hg38): chr20:43894714-43895285
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 327 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00028164; NONHSAT079843
Alternative gene names: XLOC_013528; linc-TOX2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -233.5128 non-coding 
CPAT coding probability 1.03% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01728:9 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TOX2-1:2
3.1 lnc-TOX2-1:2
4.0 lnc-TOX2-1:2
4.1 lnc-TOX2-1:2
5.0 lnc-TOX2-1:2
5.1 LINC01728:4
5.2 LINC01728:9