Transcript: LINC01728:10

Basic information

LNCipedia transcript ID: LINC01728:10 
HGNC Gene Symbol: LINC01728    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1728
Ensembl Gene ID: ENSG00000233277
Ensembl Transcript ID: ENST00000428529
Location (hg38): chr20:43894720-43895468
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 524 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00027934; ENST00000428529; ENST00000428529.1; RP5-1030M6.3-001; OTTHUMT00000079327.1; NONHSAT079844
Alternative gene names: XLOC_013528; linc-TOX2; ENSG00000233277; RP5-1030M6.3; ENSG00000233277.1; OTTHUMG00000032515.1; LINC01728


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -189.7641 non-coding 
CPAT coding probability 0.15% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01728:10 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TOX2-1:3
3.1 lnc-TOX2-1:3
4.0 lnc-TOX2-1:3
4.1 lnc-TOX2-1:3
5.0 lnc-TOX2-1:3
5.1 LINC01728:6
5.2 LINC01728:10