Transcript: LINC01709:9

Basic information

LNCipedia transcript ID: LINC01709:9 
LNCipedia gene ID: LINC01709
Location (hg38): chr1:101723742-101729614
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 478 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000415532; ENST00000415532.1; RP11-411H5.1-001; OTTHUMT00000030148.1; NONHSAT139879
Alternative gene names: ENSG00000226715; RP11-411H5.1; ENSG00000226715.1; OTTHUMG00000010944.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -99.5782 non-coding 
CPAT coding probability 1.91% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01709:9 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-S1PR1-3:1
3.1 lnc-S1PR1-4:1
4.0 lnc-S1PR1-4:1
4.1 lnc-S1PR1-4:1
5.0 lnc-S1PR1-4:1
5.1 LINC01709:5
5.2 LINC01709:9