Transcript: LINC01707:3

Basic information

LNCipedia transcript ID: LINC01707:3 
HGNC Gene Symbol: LINC01707    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1707
Ensembl Gene ID: ENSG00000223883
Ensembl Transcript ID: ENST00000425517
Location (hg38): chr1:69055898-69185003
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 627 bp
Exons: 5
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000425517; ENST00000425517.1; RP11-424D14.1-001; OTTHUMT00000025521.1; NONHSAT003832
Alternative gene names: ENSG00000223883; RP11-424D14.1; ENSG00000223883.1; OTTHUMG00000009216.1; LINC01707


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -406.0153 non-coding 
CPAT coding probability 1.02% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01707:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-LRRC7-2:1
3.1 lnc-LRRC7-4:1
4.0 lnc-LRRC7-4:1
4.1 lnc-LRRC7-4:1
5.0 lnc-LRRC7-4:1
5.1 LINC01707:2
5.2 LINC01707:3