Transcript: LINC01700:3

Basic information

LNCipedia transcript ID: LINC01700:3 
HGNC Gene Symbol: LINC01700    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1700
Ensembl Gene ID: ENSG00000232837
Ensembl Transcript ID: ENST00000433952
RefSeq ID: NR_109962
Location (hg38): chr21:38974429-38977774
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1598 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00028933; ENST00000433952; ENST00000433952.1; AF064858.7-001; OTTHUMT00000141402.1; NONHSAT082135; NR_109962; NR_109962.1
Alternative gene names: XLOC_014078; linc-ERG-1; ENSG00000232837; AF064858.7; ENSG00000232837.1; OTTHUMG00000066032.1; LINC01700; LOC101928435


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -70.5328 non-coding 
CPAT coding probability 1.13% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01700:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PSMG1-7:1
3.1 lnc-PSMG1-8:1
4.0 lnc-PSMG1-8:1
4.1 lnc-PSMG1-8:1
5.0 lnc-PSMG1-8:1
5.1 LINC01700:2
5.2 LINC01700:3