Transcript: LINC01699:3

Basic information

LNCipedia transcript ID: LINC01699:3 
HGNC Gene Symbol: LINC01699    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1699
Ensembl Gene ID: ENSG00000179452
Ensembl Transcript ID: ENST00000319701
RefSeq ID: NR_046249
Location (hg38): chr1:181236388-181238604
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 259 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000319701; ENST00000319701.2; RP11-380B22.1-001; OTTHUMT00000085141.1; NONHSAT008292; NR_046249; NR_046249.1
Alternative gene names: ENSG00000179452; RP11-380B22.1; ENSG00000179452.2; OTTHUMG00000035177.1; GM140; LINC01699


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -527.2652 non-coding 
CPAT coding probability 1.13% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01699:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-IER5-2:1
3.1 lnc-IER5-2:1
4.0 lnc-IER5-2:1
4.1 lnc-IER5-2:1
5.0 lnc-IER5-2:1
5.1 LINC01699:2
5.2 LINC01699:3