Transcript: LINC01697:35

Basic information

LNCipedia transcript ID: LINC01697:35 
LNCipedia gene ID: LINC01697
Location (hg38): chr21:28090314-28102790
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 449 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: TCONS_00028828; ENST00000423808; ENST00000423808.1; AL035610.1-003; OTTHUMT00000171688.1; NONHSAT081591
Alternative gene names: XLOC_013900; linc-USP16-5; ENSG00000232079; AL035610.1; ENSG00000232079.1; OTTHUMG00000078709.1; ENSG00000232079.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -10.696 non-coding 
CPAT coding probability 0.39% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01697:35 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-USP16-3:6
3.1 lnc-USP16-3:6
4.0 lnc-USP16-3:6
4.1 lnc-USP16-3:6
5.0 lnc-USP16-3:6
5.1 LINC01697:14
5.2 LINC01697:35