Transcript: LINC01687:10

Basic information

LNCipedia transcript ID: LINC01687:10 
HGNC Gene Symbol: LINC01687    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1687
Ensembl Gene ID: ENSG00000233215
Ensembl Transcript ID: ENST00000420255
RefSeq ID: NR_109959
Location (hg38): chr21:22009158-22098459
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 897 bp
Exons: 6
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000420255; ENST00000420255.1; AP000472.2-001; OTTHUMT00000171043.1; NONHSAT081388; NR_109959; NR_109959.1
Alternative gene names: ENSG00000233215; AP000472.2; ENSG00000233215.1; OTTHUMG00000078243.1; ENSG00000233215.5; LINC01687; LOC101927843


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 20.8827 non-coding 
CPAT coding probability 0.61% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01687:10 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MRPL39-14:1
3.1 lnc-TMPRSS15-14:1
4.0 lnc-MRPL39-38:1
4.1 lnc-MRPL39-38:1
5.0 lnc-MRPL39-38:1
5.1 LINC01687:2
5.2 LINC01687:10