Transcript: LINC01684:25

Basic information

LNCipedia transcript ID: LINC01684:25 
LNCipedia gene ID: LINC01684
Location (hg38): chr21:24428740-24490307
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2909 bp
Exons: 6
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000453784; ENST00000453784.1; AP000476.1-001; OTTHUMT00000171137.1; NONHSAT081450
Alternative gene names: ENSG00000237484; AP000476.1; ENSG00000237484.3; OTTHUMG00000078326.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 2.1969 non-coding 
CPAT coding probability 41.68% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC01684:25 no no no no

Available literature

  1. Sookoian (2017), Genetic variation in long noncoding RNAs and the risk of nonalcoholic fatty liver disease., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-JAM2-6:2
3.1 lnc-JAM2-6:1
4.0 lnc-JAM2-6:1
4.1 lnc-JAM2-6:1
5.0 lnc-JAM2-6:1
5.1 LINC01684:10
5.2 LINC01684:25