Transcript: LINC01678:12

Basic information

LNCipedia transcript ID: LINC01678:12 
LNCipedia gene ID: LINC01678
Location (hg38): chr21:44156424-44160801
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 4123 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00029171; NONHSAT082479
Alternative gene names: XLOC_014110; linc-CSTB-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 29.5244 non-coding 
CPAT coding probability 45.75% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC01678:12 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ICOSLG-6:1
3.1 lnc-ICOSLG-6:1
4.0 lnc-ICOSLG-6:1
4.1 lnc-ICOSLG-6:1
5.0 lnc-ICOSLG-6:1
5.1 LINC01678:2
5.2 LINC01678:12