Transcript: LINC01676:24

Basic information

LNCipedia transcript ID: LINC01676:24 
HGNC Gene Symbol: LINC01676    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1676
Ensembl Gene ID: ENSG00000230768
Ensembl Transcript ID: ENST00000435253
Location (hg38): chr1:105602152-105618958
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1849 bp
Exons: 4
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT004924; ENST00000435253.2; ENST00000435253.5
Alternative gene names: ENSG00000230768.3; RP11-251P6.1; ENSG00000230768.7; LINC01676


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -49.2968 non-coding 
CPAT coding probability 1.85% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01676:24 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AMY1B-3:5
4.0 lnc-AMY1B-3:5
4.1 lnc-AMY1B-3:5
5.0 lnc-AMY1B-3:5
5.1 LINC01676:3
5.2 LINC01676:24